SE3840639

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8957
  • Solanum tuberosum
  • SE3840639
  • CACTA
  • Ca1
  • chr06:52115309-52115519
  • TGA
  • ACACTACAACAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG        A      CAAC                 - T    A   -  AAAAAG  CTAAAGTCTTTACCAATATTAGTTAAGTGTCATTAGATCCAATATCGCTA
  ACACTACA CAAAAA    TTTTAGCGGCAATAAAT G ACAC TTA AT      TG                                                  
  |||||||| ||||||    ||||||||||||||||| | |||| ||| ||      ||                                                  A
  TGTGATGT GTTTTT    GAAATCGCCGTTATCGA T TAAC GGC AT      TT                                                  
AG        A      ACTA                 G -    -   A  ------  ATACATAAAAATCGCCGTTAATCGTAAGAAACATATACAGGGATTTTGGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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