SE3820640

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8958
  • Solanum tuberosum
  • SE3820640
  • Mutator
  • M2
  • chr02:61093511-61093924
  • TATAAGGAA
  • AGGGCAAAAGGACAGGAATCACATACTTTTAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TATAAGGA    C    G          A   A    T   GCAAAA       --           -AAG         -ACA           AACGGATACAATAATATAAG    G  -AT    ----    G     CG    ACATTA    -- TAA   -     CATTATATTTTATACATGATAGACTAATCTGATGTACATTTTATACATGA
        AGGG AAAA GACAGGAATC CAT CTTT AAG      TTATTAT  TTGTCCCTTAT    TTTATAATT    AAAATCCCTCA                    CGCT AT   ATTA    ATCT ATGCG  AGAT      ATCA  T   GTA AGATA                                                  
        |||| |||| |||||||||| ||| |||| |||      |||||||  |||||||||||    |||||||||    |||||||||||                    |||| ||   ||||    |||| |||||  ||||      ||||  |   ||| |||||                                                  T
        TCCT TTTT CTGTCTTTAG GTA GAAA TTC      AATAATG  AATAGGGGATA    AAATGTTAA    TTTTAGGGAGT                    GCGA TA   TAAT    TAGA TGCGT  TCTA      TAGC  A   CGT GCCTA                                                  
AAGGAATA    -    A          G   -    -   -AAGAG       GT           ATTA         GAAA           ----------------AAAA    G  GTC    CACA    G     AG    ATCACA    GC ---   A     ATTACATAGCGCACGTAGGCTAATTACATAGAGCGTGTAGTCTAATCACA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End