SE3820646

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8964
  • Solanum tuberosum
  • SE3820646
  • Mutator
  • M6
  • chr02:57703984-57704345
  • AAAAGAAAA
  • GGGATAAAAGTCTGAAAAATATCTCAACTTTGGTCGAATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTATTTTAAACATATATATTTGCCCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAATGTGTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAGAAAA       AA                                                                                                                                                                 AC
         GGGATAA  GTCTGAAAAATATCTCAACTTTGGTCGAATTTGCTGTTGCGATACTAAACTTTCATGAGGACCTATTACCTCCCTAGACTATTTAATACCGTATTTTAAACATATATATTTGCCCACGTGGACATAAAAAATAATGCAAAATTATAAATAGTAATGTGTCC  
         |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         CCCTATT  TAGACTTTTTATGGGGTTGAAACCAGCTTAAGCGACAACGCTATGATTTGAAAGTACTCCTGGATAATGGAGGGATCTGATAAATTATGGCATAAAATTTGTATATATAAACGGGTGCACCTGTATTTTTTATTACGTTTTAATATTTATCATTACACAGG  
AAAAGAAAA       CC                                                                                                                                                                 TG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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