SE3850648

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8966
  • Solanum tuberosum
  • SE3850648
  • PIF/harbinger
  • To5
  • chr06:36269369-36269849
  • TAA
  • AGGGGTCGTTTGGTAGAAATTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 ---A     AATGTA            TCAATAGA  GTATTAGTAATGCTTGCATTAGTAATACTTGTATTAGTTATGCTTGCATTAATAATACATGTATTAGTTATGCATAGATTATTTCTTATGCATTGTTTGGTTTGGTGTATTAAAAATAGTATGCATCGTATAAAAATATTTATTTACAAAAATATCCTCCACAATTATAGTGGAAAAGATGTAAAAGTGCTT
  AGGGGTCGTTTGGTAGA    ATTAG      TAAAAATAATGC        AT                                                                                                                                                                                                
  |||||||||||||||||    |||||      ||||||||||||        ||                                                                                                                                                                                                 
  TCCCCAGCAAACCATCT    TAATC      GTTTTTATTACG        CG                                                                                                                                                                                                
AA                 CACA     ------            ------TA  TAATCGAGACACATAATCATCAGGGAACAAACCATGTGTAAAAGTACAATACATATTGATTACGAACGTAATTAATATGTGAGATAACACATAACTCCTCACATAATGATTATGGGACTTAAAGATCTATAATCATTACGTTTCCCTAAATTATGTACGTAATCGTACCAATTTCTGGGTTAATGGGGAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3