SE3810650

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8968
  • Solanum tuberosum
  • SE3810650
  • Tc1/Mariner
  • St17
  • chr06:1075242-1075516
  • TA
  • TCCCTCTAGTCCATGTTAAGTGAATTGTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC   C                               TCTTTCATAGTTCAAAATAAGTGAATAATTCAAAGTTCAAGAAAATTGTCGGGACTTTTTTCCATATTTAACCTTCATTTAATAAGGTTCTTAACTACTT
   TCC TCTAGTCCATGTTAAGTGAATTGTTGGGACT                                                                                                    
   ||| |||||||||||||||||||||||||||||||                                                                                                     
   AGG AGATCAGGTATAATTCACTTAACAACCCCAT                                                                                                    
 AT   A                               ACCGTGTGGGAAGTTCCTTTTACGAATTCCTGTATTTAATTTCCGATGAAAGGTGATAATGGGAAAACTAATAAAGGTTTGATCAGAGGATCTTTTACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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