SE3820651

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8969
  • Solanum tuberosum
  • SE3820651
  • Mutator
  • M19
  • chr10:14575390-14575821
  • TAAAAAAAA
  • AGGGAAAAGGCTCAAATATGCCATCGAACTTTTAGAAAAGGCTCATTTATGTCATCCGTTAAAAGTTGGGTTCATCTATGTCATTAACGTTTAAGAAAAGGCTCATTCATGCCACTATTTTTTAACAGTGGTTTTGCAAAACCATTTTTGACACGTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAAA          C         C                               C  C           G                  A              C  A         C          C                       GAC      ----------CAA   ATAATTCGATCACGTCATTATTATTTTTTATAAAAAAAAA
        AGGGAAAAGG TCAAATATG CATCGAACTTTTAGAAAAGGCTCATTTATGT AT CGTTAAAAGTT GGTTCATCTATGTCATTA CGTTTAAGAAAAGG TC TTCATGCCA TATTTTTTAA AGTGGTTTTGCAAAACCATTTTT   ACGTGG             ATT                                        
        |||||||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||||| || ||||||||| |||||||||| |||||||||||||||||||||||   ||||||             |||                                        T
        TCCCTTTTCC AGTTTATAC GTAGCTTGAAAATCTTTTCTGAGTAAATACA TA GCAATTTTCAA CTGAGTAGATACAGTAAT GCAAATTCTTTTCT AG AAGTACGGT ATAAAAAATT TCACCAAAACGTTTTGGTAAAAA   TGTATC             TGA                                        
AAAAAAAA          A         A                               A  A           A                  G              A  C         A          A                       ---      ACTATTACAGAAA   ACCTACTCAATAAAATTAAGTTAAAAACAAGTCTTAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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