Plant MITE

SE3850652

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8970
Solanum tuberosum
SE3850652
PIF/harbinger
To4
chr02:38619679-38620291
TTA
GGGCCCGTTTGGCCATAGATT

Secondary structure and sequence

TSD TIR

5'

3'

TTA    --C                ---------        AAAACTTGGGAAAAAATTTGGCAAATATTGTTTGTCCATACACTTTCTCATTATTTGGCTAAAATTTTTGGCAATAACCCAAATTCCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGGAAAGTTTTAAAAATTCAAAATTTAACACCAAACTTTTTATCTTTTACAAAAACACTTTATTTATTAACACCAACCAACTCAATCAAATCTCCATCTGCTAACTAACTCAATTAATAAATTTTTCTATTATAAAGAGC
   GGGC   CGTTTGGCCATAGATT         TCCCAAGT                                                                                                                                                                                                                                                                              
   ||||   ||||||||||||||||         ||||||||                                                                                                                                                                                                                                                                               
   TTCG   GCAAACCGGTATCTAA         TAAACCGT                                                                                                                                                                                                                                                                              
  A    ATC                AGGTTTATA        TTATAATAAACCCACTTCTAAACCCACTTTAAAGTAGTACACAAACCGGTATCATAAACCCTTTATATAAAGTTAAAAAATTCTTTATACTGAATACGGGTATTCAAAAATTTTGATAGTTTTGATTGGTATTTAAACATAATGTATCGTTTTATCTTTACAGCGCATTGTTCTAAGTACTGAAGGCGTTGTTTAGTTTTTTCGTAGTAATGTCATTTATCAGCGTAGCAATTTTTTCTACGTACCCATATTTTCGAGAACATGTACATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3850652

TTAGGGCCCGTTTGGCCATAGATTTCCCAAGTAAAACTTGGGAAAAAATTTGGCAAATATTGTTTGTCCATACACTTTCTCATTATTTGGCTAAAATTTTTGGCAATAACCCAAATTCCCAAATACTAGTTTTTTCTAGTATTTGGGCCAAATCTCATTATTTGGAAAGTTTTAAAAATTCAAAATTTAACACCAAACTTTTTATCTTTTACAAAAACACTTTATTTATTAACACCAACCAACTCAATCAAATCTCCATCTGCTAACTAACTCAATTAATAAATTTTTCTATTATAAAGAGCATACATGTACAAGAGCTTTTATACCCATGCATCTTTTTTAACGATGCGACTATTTACTGTAATGATGCTTTTTTGATTTGTTGCGGAAGTCATGAATCTTGTTACGCGACATTTCTATTTTGCTATGTAATACAAATTTATGGTTAGTTTTGATAGTTTTAAAAACTTATGGGCATAAGTCATATTTCTTAAAAAATTGAAATATATTTCCCAAATACTATGGCCAAACACATGATGAAATTTCACCCAAATCTTCACCCAAATAATATTTGCCAAATATATTTGGAAATCTATGGCCAAACGCTAGCTTA

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