SE3830659

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8977
  • Solanum tuberosum
  • SE3830659
  • hAT
  • Hat10
  • chr11:39661358-39661848
  • ACAAATAT
  • CTAAGTTGCTCGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAAATATC          C       --   --------T     ----    TC   G     CCCGTGTCAACACGACGTGGGTGTGGGATCTGTACTCGATCTGGTCAATTGGTTTTGGGTACTTTGACCAAATTCGAGGAAGAAATTCTAGACAGATTCAATGATTTCTTTAATAATAACAAAAACTAAGGTGAAATTGAAGAAATGAGATACCTTGTATATATAAATTTCTATTGTCACTCCCTCTCC
         CTAAGTTGCT GGACTCT  TCA         TTTCG    CCTT  GGT CCGCA                                                                                                                                                                                             
         |||||||||| |||||||  |||         |||||    ||||  ||| |||||                                                                                                                                                                                             T
         GATTCAACGA CCTGAGC  ACG         TATAG    GCTT  AGA TCTCC                                                                                                                                                                                             
 CTATAAAC          A       CC   CCCACAGAT     CCAC    --   -     AGCCTAGGAGATACTAAATTTAAAACTCTAAGCCCCTATGCCTAGGTATATACCTATGCCCACGCCCGTAAGCTGAATTTTATTAAGTTTATAGATATTTATCTCAATATTTTGGATTTATTACTCTATAATACACCTTTTGAACTCCTCTTTTATAACTAGTTCTCATCTTGGGATCTTCCTCTATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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