SE3820661

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8979
  • Solanum tuberosum
  • SE3820661
  • Mutator
  • M11
  • chr03:10720585-10720913
  • TTTTTTTCG
  • GGGAAAATGCATAAGTACCCTCCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCCCCTGAACTTATTTTATAAATAATTTTCTACCCTTTTTGGCCTACGTGGCACTATCTTCTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTTTTC                    T                                                          C                                    -   C              TT    ---  CCAGCGCGTGTTG
        GGGAAAATGCATAAGTACCC CCAACCTATGCCCGAAATCTCAGAGACACACTTATACTATACTAAGGTCCTATTACCC CTGAACTTATTTTATAAATAATTTTCTACCCTTTTT GGC TACGTGGCACTATC  CTGG   GC             
        |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  ||||   ||              
        CCCTTTTACGTATTCATGGG GGTTGGATACGGGCTTTAGAGTCTCTGTGTGAATATGATATGATTCCAGGATAATGGG GGCTTGAATAAAATATTTATTAAAAGATGGGGAAAA CCG ATGCACCGTGATAG  GGTC   CA             
CTTTTTTT                    -                                                          A                                    G   T              TT    TAT  AACTTTTTTAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3