Plant MITE

SE3820663

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8981
Solanum tuberosum
SE3820663
Mutator
M6
chr12:37873095-37873407
AAATTACTT
TTGGGTAAAGGGTTCGAAATATATTCGAACTTTGACCGAAAATGCTGTAACAATC

Secondary structure and sequence

TSD TIR

5'

3'

AAATTAC     T    -GG   G         C         C     A  C          CCAAT         T         --  G                                           CG      TCATAAATCTTGCATT
       TTGGG AAAG   TTC AAATATATT GAACTTTGA CGAAA TG TGTAACAATC     TTTTGGGCA GACCTATTA  CC CTGCACTATTTAATAGTGTATTTTAAAGATATATAGGTGCCCA  TGGACA                
       ||||| ||||   ||| ||||||||| ||||||||| ||||| || ||||||||||     ||||||||| |||||||||  || |||||||||||||||||||||||||||||||||||||||||||  ||||||                 
       AACCC TTTT   GAG TTTATATAA CTTGAAACT GCTTT AC ACATTGTTAG     GAAACCTGT CTGGATAAT  GG GACGTGATAAATTATCACATAAAATTTCTATATATTCACGGGT  ACTTGT                
TTCATTA     T    ATG   -         A         A     A  A          -CTTT         C         GA  G                                           CG      TCAATGATAAATATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820663

AAATTACTTGGGTAAAGGGTTCGAAATATATTCGAACTTTGACCGAAAATGCTGTAACAATCCCAATTTTTGGGCATGACCTATTACCGCTGCACTATTTAATAGTGTATTTTAAAGATATATAGGTGCCCACGTGGACATCATAAATCTTGCATTATTATAAATAGTAACTTGTTCAGCTGGGCACTTATATATCTTTAAAATACACTATTAAATAGTGCAGGGGAGTAATAGGTCCTGTCCAAAGTTTCGATTGTTACAACAATTTCGATCAAAGTTCAAATATATTTGAGGTATTTTTCCCAAATTACTT

Copy Cancel