Plant MITE

SE3820665

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8983
Solanum tuberosum
SE3820665
Mutator
M8
chr12:63988626-63988966
GGTCAATGA
TCAATGAAGGCATAATACATAATTATGCCCTTTAACTTCGTCTCATTTTATATTTATGTCCTCCAACTTTG

Secondary structure and sequence

TSD TIR

5'

3'

GG   A   -A              T      C        C -                  T -           -   GTCCAACTTTGAGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACACACGCCCTATGTGGCATCCTACATGACAATT
  TCA TGA  GGCATAATACATAA TATGCC TTTAACTT G TCTCATTTTATATTTATG C CTCCAACTTTG AGT                                                                                              
  ||| |||  |||||||||||||| |||||| |||||||| | |||||||||||||||||| | ||||||||||| |||                                                                                               
  AGT ACT  CCGTATTATGTATT ATACGG AAATTGAA C GGAGTAAAGTGTAAATAT G GAGGTTGAAAC CAC                                                                                              
 A   A   GG              T      A        - T                  - A           C   ACGTATTTATCTGCGAATTTGAACATATTTCAACTTGTTCATTTGTGTATTCAGGATTCACCGTATTATGTGTATCCTGTGGTGCATCCTGCGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820665

GGTCAATGAAGGCATAATACATAATTATGCCCTTTAACTTCGTCTCATTTTATATTTATGTCCTCCAACTTTGAGTGTCCAACTTTGAGTGTGCACAAGTAGACACTTAAACTTGTATAAAATTGAACAAATAGACACACACGCCCTATGTGGCATCCTACATGACAATTTGCGTCCTACGTGGTGTCCTATGTGTATTATGCCACTTAGGACTTATGTGTTTACTTGTTCAACTTTATACAAGTTTAAGCGTCTATTTATGCACACCCAAAGTTGGAGAGTATAAATGTGAAATGAGGTCAAGTTAAAAGGCATATTTATGTATTATGCCGGTCAATGAA

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