SE2160002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8986
  • physcomitrella Patens
  • SE2160002
  • Micron
  • Mim1
  • scaffold_403:160720-160940
  • TACATAT
  • ATATGTAGGGGAATGTTAAATAGACCCAAGTTTTTACTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAC      A                     A             CAAC      -----------ATCTTAACC    TGAAAAAAAATGATTTCTGGATTCATTTCTCCATTA
   ATATGT GGGGAATGTTAAATAGACCCA GTTTTTACTAAAT    CCACCC                    ATCA                                    
   |||||| ||||||||||||||||||||| |||||||||||||    ||||||                    ||||                                     
   TATATA CCCCTTACAATTTATCTGGGT CGAAAATGATTTA    GGTGGG                    GTGT                                    
ATA      A                     A             -TAT      AATTATTTCTTATACTATTA    TACTTACACCAACCAAAAATAACCAATGTTTAGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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