SE2160004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8988
  • physcomitrella Patens
  • SE2160004
  • Micron
  • Mim2
  • scaffold_65:1755115-1755401
  • TAATTAG
  • TAGGGAAATGATAAAGTAACCCAAATTTTTATTAAAGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAT                   C                GA   CCACTCTATCTTAA        C   TTTG     T               A        -CA               ------AAG     GAGC  GA
    TAGGGAAATGATAAAGTAA CCAAATTTTTATTAAA  AAT              CATCATTG ACC    TAGCT CCATTCCTATTCTCA CTATTCTC   TTTCCAACCGTTGCT         GATGG    AG  
    ||||||||||||||||||| ||||||||||||||||  |||              |||||||| |||    ||||| ||||||||||||||| ||||||||   |||||||||||||||         |||||    ||   
    ATCCTTTTACTATTTCGTT GGTTTAAAAATGATTT  TTG              GTAGTAAC TGG    ATTGG GGTAGGGATAGGAGT GGTAAGGG   AAAGGTTGGTAACGG         CTACT    TC  
TAAT                   A                AG   AATATACAAATTTG        A   -TAA     -               C        AAC               GGGTAAGAA     AAGA  AG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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