SE2160007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8991
  • physcomitrella Patens
  • SE2160007
  • Micron
  • Mim1
  • scaffold_2:4753916-4754163
  • ATATACA
  • ATATATATAGAGGAATGTTAAATAAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATATAC        A               A   CCAT            T   CTGT      -----------------AAACCATTATAAAAAATAAAATAAA      CCTCTAGATTCATTTCT
      ATATATAT GAGGAATGTTAAATA ACC    TTTTTACTAAAT GAT    CCATCC                                          AAATGA                 
      |||||||| ||||||||||||||| |||    |||||||||||| |||    ||||||                                          ||||||                 C
      TATATATA TTTCTTACAATTTAT TGG    AAAAATGATTTA CTG    GGTGGG                                          ATAACC                 
   ATA        A               C   ATAC            T   ----      AACTACTTCTTATACCATTAACACTACTTACACCAACCAAAA      GAAGTCTAGGTTATCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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