Plant MITE

SE2160010

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8994
physcomitrella Patens
SE2160010
Micron
Mim1
scaffold_92:110107-110317
TATATAT
TATATATATATAGGGAATTGTTAAAGTGATCCAAGCATTTATTAAATCAGTCCACCTATTATCCTTGGTTGAGGA

Secondary structure and sequence

TSD TIR

5'

3'

             ----AG            GTG                      T -        --    T G        TCCAA     TTTTAACA   TTTTA
  TATATATATAT      GGAATTGTTAAA   ATCCAAGCATTTATTAAATCAG C CACCTATT  ATCC T GTTGAGGA     CCATT        TGT     
  |||||||||||      ||||||||||||   |||||||||||||||||||||| | ||||||||  |||| | ||||||||     |||||        |||     A
  ATGTATATATA      CCTTAACAATTT   TAGGTTCGTAAATGATTTAGTT G GTGGGTAG  TAGG A TAGTTTTT     GGTGA        ACG     
AT           GATATA            AAA                      - A        GA    T G        TAAGA     TCATCTAA   TAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2160010

TATATATATATAGGGAATTGTTAAAGTGATCCAAGCATTTATTAAATCAGTCCACCTATTATCCTTGGTTGAGGATCCAACCATTTTTTAACATGTTTTTAACCAATGCAAATCTACTAGTGGAGAATTTTTTGATGATGGATAGGATGGGTGAGTTGATTTAGTAAATGCTTGGATAAATTTAACAATTCCATATAGATATATATGTATA

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