SE2160011

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8995
  • physcomitrella Patens
  • SE2160011
  • Micron
  • Mim1
  • scaffold_41:1931002-1931233
  • TATATAT
  • TATATATAAGGGAATGTTAAATAGACCCAAGTTTTTACTAAATCAACTTACCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA        A                  CAA   T         CA          AAT    ----AAT    T   -   --  TGAATGTCGTTGGTTTTCATTGGTTTTGG
  TATATATA GGGAATGTTAAATAGACC   GTT TTACTAAAT  ACTTACCTAT   GAAG       ATGG AAT CAT  GA                             
  |||||||| ||||||||||||||||||   ||| |||||||||  ||||||||||   ||||       |||| ||| |||  ||                              
  ATATATAT TTCTTACAATTTATCTGG   CAA AATGATTTA  TGGGTGGGTA   TTGG       TTTC TTT TTT  AT                             
          A                  ATC   T         AA          AGA    TAACACT    -   T   TA  GGAGATCTAAATAAAGAGGTTATAACCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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