Plant MITE

SE2160012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8996
physcomitrella Patens
SE2160012
Micron
Mim1
scaffold_403:160721-160953
TATATAT
TATATATATATTGGGGAATGTTAAATAGACCCATGCTTTTACTAAATATACCACCC

Secondary structure and sequence

TSD TIR

5'

3'

         ATT                     T C           - TA      TTAATAAAGAATATGA       AATGAATGTGGTTGGTTTTTATTGGTTACAAATCTAA
TATATATAT   GGGGAATGTTAAATAGACCCA G TTTTACTAAAT A  CCACCC                TAATCAC                                     
|||||||||   ||||||||||||||||||||| | ||||||||||| |  ||||||                |||||||                                      
ATATGTATA   CCCCTTACAATTTATCTGGGT C AAAATGATTTA T  GGTGGG                TTGGTAG                                     
         CAT                     T A           G TG      -----------TAGAA       TACTTTTTTTTACTAAAGACCTAAGTAAAGAGGTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2160012

TATATATATATTGGGGAATGTTAAATAGACCCATGCTTTTACTAAATATACCACCCTTAATAAAGAATATGATAATCACAATGAATGTGGTTGGTTTTTATTGGTTACAAATCTAATAATGGAGAAATGAATCCAGAAATCATTTTTTTTCATGATGGTTAAGATGGGTGGGTTGATTTAGTAAAAACTTGGGTCTATTTAACATTCCCCTACATATGTATA

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