SE2160018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9002
  • physcomitrella Patens
  • SE2160018
  • Micron
  • Mim1
  • scaffold_42:2055194-2055410
  • AATATTT
  • AATATTTAGGGGAATGTTAAATAGACTCATGCTTTTACTAAATCGACCCATCTTTGATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
        TA                     T C           C    C    T G    AGAA     T  TC       -A     -  G      -AT      CAA
  AATATT  GGGGAATGTTAAATAGACTCA G TTTTACTAAAT GACC ATCT T ATGA    TATGG AA  ATAATGA  TGTGG TT GTTTTT   TTGTTG   
  ||||||  ||||||||||||||||||||| | ||||||||||| |||| |||| | ||||    ||||| ||  |||||||  ||||| || ||||||   ||||||    
  TTATAA  CCCCTTACAATTTATCTGAGT C AAAATGATTTA CTGG TGGG A TATT    GTACT TT  TATTACT  ACATC AA TAAAAA   GATAAC   
TT      --                     T A           A    A    T G    GGTA     T  TT       GA     T  G      GGT      CTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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