SE3630001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9004
  • Selaginella moellendorffii
  • SE3630001
  • hAT
  • Hat1
  • scaffold_5:2675218-2675505
  • TTGGTAAG
  • AGCATACTTGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGGTA             C   AC     AACGCAACCGGATTCGAACGGGTATCGAACGTTTAATACCCGTTTAGCTTTTTTTCGAACGGGTATAATGGTTTTCAGTTTTTTTCGAACCCTGATTTTACGGTTTTTTTCGAAC
      AGCATACTTGCAT CGA  ATTCG                                                                                                                   
      ||||||||||||| |||  |||||                                                                                                                   A
      TTGTATGAACGTA AGC  TTGCC                                                                                                                   
GAATGG             -   --     CATACTAATTATTTTTTGCGGCAAATTTTGCGCGCATATTATGCCGCAAATTTGTGGTTCTTATAAAAATTTTTGGGATTTCTTATACGAAAGAAAATGAATCCTAATCCCAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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