SE2850005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9010
  • Sorghum bicolor
  • SE2850005
  • PIF/harbinger
  • To2
  • chromosome_10:726025-726273
  • TAA
  • GGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA                C                 TTTTC   - -  TCCATCACATCGAATCTTGCGGCATATGCATGGAGCATTAAATATAGATAAAAACAAAAACTAATTATACAGTTTAC
   GGCCTTGTTTAGTTCC AAAAAATTTTGCAAAAT     AGA T TC                                                                             
   |||||||||||||||| |||||||||||||||||     ||| | ||                                                                              
   TCGGAACAAATCAAGG TTTTTTAAAACGTTTTA     GTG C TC                                                                             
GAA                -                 --CCA   G A  GTAAAAATAAACATAAACTGTTTATAACAGGTTAGTATCTAATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATGCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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