SE2850009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9014
  • Sorghum bicolor
  • SE2850009
  • PIF/harbinger
  • To3
  • chromosome_10:52295509-52295967
  • TAA
  • AGGCCTTGTTTAGTTCACCC

Secondary structure and sequence

TSD    TIR
5'



3'
TA               C    CAAAAACCA                C                  T                C   T       AT                      A   AA               C           T     G                                                  A   -AAAT   A  TC    C   T
  AGGCCTTGTTTAGTT ACCC         AAAAGTTTTCAAGATT TCTGTCACATCGAATTTT CGGCACATGCATGAAG ATT AGTATAG  AAAAATAAAAATTAATTGCATA TTT  CTGTAAATCGCGAGA GAATCTTTTGA TCTAG TAGTCCATGATTGGACAATATTTGCCACAAACAAACGAAAGTGCTACAGT GCG     CCA AA  TTTT GCA 
  ||||||||||||||| ||||         |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||  |||||||||||||||||||||| |||  ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||     ||| ||  |||| ||| C
  TCCGGAACAAATCAA TGGG         TTTTTAAAAGTTCTAA AGGCAGTGTAGCTTAGAA GCTGTGTACGTACTTC TAA TTATATC  TTTTTATTTTTGATTAATGTGT AAA  GACATTTAGTGCTCT CTTAGAAAACT GGATT ATCAGGTATTAACTTGTTATAAACGGTGTTTGTTTGCTTTTACGATGTCA CGT     GGT TT  AAAA CGT 
AA               A    ---------                A                  C                A   T       AT                      C   CA               A           C     A                                                  -   AACTT   C  TA    -   T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End