SE2810010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9015
  • Sorghum bicolor
  • SE2810010
  • Tc1/Mariner
  • St1
  • chromosome_6:33777484-33777722
  • TA
  • TACTCCCTCCGTCCCAAAAAGAATGTCGTTTTAGGTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                   A  A         A G      TGCCAC  G       C   ---TT           -------AT   - T -   --  ATCTCTAAATAAATTTGTTAAAAAAC
TACTCCCTCCGTCCCAAAA GA TGTCGTTTT G TTTTTG      AA TTTGACT GAT     GTAGAAAATAT         GCA A A TTT  AT                          
||||||||||||||||||| || ||||||||| | ||||||      || ||||||| |||     |||||||||||         ||| | | |||  ||                           
ATGAGGGAGGCAGGGTTTT TT ACAGCAAAA C AAGGGC      TT AAATTGA TTA     CATTTTTTATA         ATC T G ATT  TC                          
                   A  C         G G      TCTTTA  G       T   TATAT           ATCATAAAT   A - T   AA  ATAGTAACCTTTCTAGAAATTCAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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