SE2850012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9017
  • Sorghum bicolor
  • SE2850012
  • PIF/harbinger
  • To3
  • chromosome_10:682782-683034
  • TGA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                ACCC       CAAAAAGTTTTCAAGATTCTCCGTCACATCGAATCTTGTGGCACATGCATAAAACATTAAATATAGACAAAAATAAAAACTAATTACACAGTTTAGGTG
  AGGCCTTGTTTAGTTC    TGAAAAC                                                                                                   
  ||||||||||||||||    |||||||                                                                                                   T
  TCCGGAACAAATCAAG    GCTTTTC                                                                                                   
AG                ----       ATTTTTGAAAAGCCATGACATCGTAAATAAAAGCAAACAAACACTGTTTATAATAGGTTAGTACCTGATTGATCCTAGTTTTCTAAGCAGAGCACTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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