Plant MITE

SE2810013

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9018
Sorghum bicolor
SE2810013
Tc1/Mariner
St2
chromosome_3:7333880-7334150
TA
TACTCCCTCCATGTTCCTAAAGATAGTTGTTTTGA

Secondary structure and sequence

TSD TIR

5'

3'

                C      T           ----    GT --  ---- A    AAC  TTTTAAACTTTGACTACAAATAAATTCTTTTGGGTTGAGTTTAAAAATATATAAATGATATAAGTAGATTCATTTTGA
TACTCCCTCCATGTTC TAAAGA AGTTGTTTTGA    AATT  C  TT    A GTCA   AT                                                                              
|||||||||||||||| |||||| |||||||||||    ||||  |  ||    | ||||   ||                                                                              A
ATGAGGGAGGTACAGG ATTTCT TCAGTAAAATT    ATTG  T  CA    A GGTT   TT                                                                              
                A      T           TGTA    -- GC  GGAG -    ---  ATTAAAACTTATGATGAAAAACGATATTTTATAAATATTTTATATCAGTTATGGTATATATGAAAATATTTTGATGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810013

TACTCCCTCCATGTTCCTAAAGATAGTTGTTTTGAAATTGTCTTAAGTCAAACATTTTTAAACTTTGACTACAAATAAATTCTTTTGGGTTGAGTTTAAAAATATATAAATGATATAAGTAGATTCATTTTGAAATGTAGTTTTATAAAAGTATATATGGTATTGACTATATTTTATAAATATTTTATAGCAAAAAGTAGTATTCAAAATTATTTTGGAGAGGACCGTGTTAATGTTTAAAATGACTTTCTTTAAGGACATGGAGGGAGTA

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