Plant MITE

SE2850014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9019
Sorghum bicolor
SE2850014
PIF/harbinger
To1
chromosome_1:19581476-19581724
TTA
AGGCCTTGTTTAGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                ACCCCGAAATTC          CAA      CCGTCACA   AA CTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAACAAAAATTAATTACACAGTTTGTCTGTAAATCG
  AGGCCTTGTTTAGTTT            AAAAAGTTTT   GATTTC        TCG  T                                                                        
  ||||||||||||||||            ||||||||||   ||||||        |||  |                                                                        C
  TCCGGAACAAATCAAG            TTTTTTAAAG   CTAAAG        CGA  T                                                                        
AT                ----------AC          --C      --------   -- GACATCGTGAAAGCAAAAATAAACTGTTTATAACAGATTAATACTTGATTGATCCTAGTTTTCTAAGCAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850014

TTAGGCCTTGTTTAGTTTACCCCGAAATTCAAAAAGTTTTCAAGATTTCCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAACAAAAATTAATTACACAGTTTGTCTGTAAATCGCGAGACGAATCTTTTGATCCTAGTTAGTTCATAATTAGACAATATTTGTCAAATAAAAACGAAAGTGCTACAGTAGCGAAATCCGAAATTTTTTCAGAACTAAACAAGGCCTTA

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