Plant MITE

SE2850017

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9022
Sorghum bicolor
SE2850017
PIF/harbinger
To3
chromosome_9:8372142-8372387
TTA
AGGCCTTGTTTAGTTCCCAAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT                -         --------TT  G      --  ACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGAAGTAACTATGTTCAAAAGATTCATCTCGTGAT
  AGGCCTTGTTTAGTTC CCAAAAATT          TG GTGGGT  AT                                                                              
  |||||||||||||||| |||||||||          || ||||||  ||                                                                               
  TCCGGAACAAATCAAG GGTTTTTGG          GT TCTAAG  GC                                                                              
AT                T         TTTTTGAAAA  -      AG  AGTGTAGTTTAGAACGCCGTGTACGTACCTCATAATTTATATCTATTTTTGTTTTTGATTAATGTGTAAACGGGCATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850017

TTAGGCCTTGTTTAGTTCCCAAAAATTTTTGGGTGGGTATACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGAAGTAACTATGTTCAAAAGATTCATCTCGTGATTTACGGGCAAATGTGTAATTAGTTTTTGTTTTTATCTATATTTAATACTCCATGCATGTGCCGCAAGATTTGATGTGACGGAGAATCTTGAAAAGTTTTTGGTTTTTGGTGAACTAAACAAGGCCTTA

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