Plant MITE

SE2810018

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9023
Sorghum bicolor
SE2810018
Tc1/Mariner
St3
chromosome_10:51250617-51250966
TA
TACTCCCTCCGTACTTGAATTACTTGTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

          ----        A   C   T    CT  - C  CTGCGAGGTTCTCGTAAAAGATGTCGCTGTGCACTCGCAGCATTAGTTTGGACGCAAATGCCCCCGTCGCTCCACCTTCTGACTTCACGACCATCAAAAAAAAGCGTGTTGGCGAGGATTCAAACCGTCGACCT
TACTCCCTCC    GTACTTGA TTA TTG CGTT  GG C TC                                                                                                                                      
||||||||||    |||||||| ||| ||| ||||  || | ||                                                                                                                                      C
ATGAGGGAGG    TATGGACT AAT AAC GCAA  TC T GT                                                                                                                                      
          TATA        A   C   T    -A  C -  ACTAACACGAATGGTTCCTCACTAATTAATATCCCATAAAAAAAGAGGAAACGGGGATAATTTATTGCGACGTCCACAATGGAAATATCGTTACAACGTATCGAGTTCACCGACCAAGAGATGCAAGTCGCGAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810018

TACTCCCTCCGTACTTGAATTACTTGTCGTTCTGGCCTCCTGCGAGGTTCTCGTAAAAGATGTCGCTGTGCACTCGCAGCATTAGTTTGGACGCAAATGCCCCCGTCGCTCCACCTTCTGACTTCACGACCATCAAAAAAAAGCGTGTTGGCGAGGATTCAAACCGTCGACCTCCAGCGCTGAACGTAGAGAACCAGCCACTTGAGCTATGCAACATTGCTATAAAGGTAACACCTGCAGCGTTATTTAATAGGGGCAAAGGAGAAAAAAATACCCTATAATTAATCACTCCTTGGTAAGCACAATCATGTCCTAAACGTCAACTAAATCAGGTATATATGGAGGGAGTA

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