Plant MITE

SE2850021

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9026
Sorghum bicolor
SE2850021
PIF/harbinger
To2
chromosome_5:621993-622240
TTA
AGGCCTTGTTTAGTTCCTTGCCGAAATTTTTTCGGGA

Secondary structure and sequence

TSD TIR

5'

3'

TT            G    TTG        ------         ---C     -   --  TTTCGTTTGTTTATGGTAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTAAA
  AGGCCTTGTTTA TTCC   CCGAAATT      TTTTCGGGA    ACTGT AGC  AA                                                                    
  |||||||||||| ||||   ||||||||      |||||||||    ||||| |||  ||                                                                    T
  TCCGGAACAAAT AAGG   GGTTTTAG      AAAAGTTCT    GGCAG GTA  TT                                                                    
AT            G    -TG        GTTTTG         AAAG     T   GC  AGAAATCTGCGTACGTACCTCATAATTTATCTTTGCTTTAATTTTTGATTAACGTGTCAAACCAGCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850021

TTAGGCCTTGTTTAGTTCCTTGCCGAAATTTTTTCGGGACACTGTAGCAATTTCGTTTGTTTATGGTAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTAAATTTCGACCAAACTGTGCAATTAGTTTTTAATTTCGTTTCTATTTAATACTCCATGCATGCGTCTAAAGATTCGATGTGACGGGAAATCTTGAAAAGTTTTGGATTTTGGGTGGAAGTAAACAAGGCCTTA

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