Plant MITE

SE2850024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9029
Sorghum bicolor
SE2850024
PIF/harbinger
To5
chromosome_2:21501209-21501838
TAA
AGAGCATCTCCAAGGGTTATGCATTTTTAGTTTTGCATTTG

Secondary structure and sequence

TSD TIR

5'

3'

TA                         TT   -           ATGG           TTC    C    AAAAATA  AAGGATAAAAAGGCGTGATCTCCAACGGTTTTGCATTTTCACTTAGCATTTGAGGGAATTTTGGGCCCACACTTTTTTCCCCAAGAGGTTTTTCTCTTGGCGCGCAATTTTCTTCGTCACCGGTAATTCTTCGCGTGTCGCGCGCCTTTGTATCGCGGCATTCCTCGCTCAGCCATCATCGCCCCGTCCAGGTCCTCGTGCCGCGTCGTTTGGTCCTCACCCGTTATGAACCTCGCCCCGT
  AGAGCATCTCCAAGGGTTATGCATT  TAG TTTTGCATTTG    AGTTTGCAAAG   ATTT AAAT       GC                                                                                                                                                                                                                                                 
  |||||||||||||||||||||||||  ||| |||||||||||    |||||||||||   |||| ||||       ||                                                                                                                                                                                                                                                  
  TCTCGTAGAGGTTCCCAATACGTAA  ATC GAAACGTAAAT    TTAAACGTTTT   TGAA TTTA       CA                                                                                                                                                                                                                                                 
AA                         --   T           --GA           TTT    T    -------  CGATAGGTTACCAAAACGTAAATCTGAAACGTTAAACGTATTGAACCGTAAATCTCCAGATCTGAACCGTATATACGGTTCGGGGGTTCGAAACGTTTAGCACTAGCAGGGGTGCGGGCGTGCTGAGCCGACGCAAGGCAGGTGGACGCGCTGAGGTGCGGGCTCGCGGCGATTCAAAACAGCGCTTCGAAACAGCCTCTCCTAGTCCCGCCCCACTCCAAGTGCTGTCCGTTTCTAGTCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850024

TAAGAGCATCTCCAAGGGTTATGCATTTTTAGTTTTGCATTTGATGGAGTTTGCAAAGTTCATTTCAAATAAAAATAGCAAGGATAAAAAGGCGTGATCTCCAACGGTTTTGCATTTTCACTTAGCATTTGAGGGAATTTTGGGCCCACACTTTTTTCCCCAAGAGGTTTTTCTCTTGGCGCGCAATTTTCTTCGTCACCGGTAATTCTTCGCGTGTCGCGCGCCTTTGTATCGCGGCATTCCTCGCTCAGCCATCATCGCCCCGTCCAGGTCCTCGTGCCGCGTCGTTTGGTCCTCACCCGTTATGAACCTCGCCCCGTCCTGATCTTTGCCTGTCGTGAACCTCACCCCGCCCTGATCCTCTCCGACAAAGCTTCGCGACAAAACTTAGCGGCGCTCGGGCGTGGAGTCGCGCAGGTGGACGGAACGCAGCCGAGTCGTGCGGGCGTGGGGACGATCACGATTTGCAAAGCTTGGGGGCTTGGCATATATGCCAAGTCTAGACCTCTAAATGCCAAGTTATGCAAATTGCAAAGTCTAAATGCAAAACCATTGGATAGCACATTTTAAGTTTTTTTTGCAAATTAGTAAATGCAAAGTCTAAATGCATAACCCTTGGAGATGCTCTAA

Copy Cancel