SE2850028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9033
  • Sorghum bicolor
  • SE2850028
  • PIF/harbinger
  • To4
  • chromosome_3:73561243-73561480
  • TTA
  • AGGCCTTGTTTAGTTTGCAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               T      ---ATTTTCA      TCCGTCACATCGAATCTTTGGTCACATGCATGGAGCATTAAATAAAGATAAAAATAAAAACTAATTACACAGTTTATCTG
  AGGCCTTGTTTAGTT GCAAAA          AGATTC                                                                                
  ||||||||||||||| ||||||          ||||||                                                                                A
  TCCGGAACAAATCAA CGTTTT          AACCGA                                                                                
AT               C      AAAACCAAAA      TGACATCGTGAAAGCAAAAATAAACTATTTGTAACAGGTTGGTACTTCATTGATCCAAGTTTTCTAAGTAGAGTGTTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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