SE2850031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9036
  • Sorghum bicolor
  • SE2850031
  • PIF/harbinger
  • To1
  • chromosome_2:59784152-59784400
  • TTA
  • AGGCCTTGTTTGGTTCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    C           --  AAAAT        TTTC    CTGTAGCACTTTCGTTTTTATTTGACAAATATTGTTCAATTATGAACTAACTAGAATTAAAAGATTCATCTCGCGATTTACAGAC
  AGGC TTGTTTGGTTC  CC     AATTCAGA    GCTA                                                                                     
  |||| |||||||||||  ||     ||||||||    ||||                                                                                      
  TCCG AACAAATCAAG  GG     TTAAGTTT    TCAA                                                                                     
AT    C           TA  --GCT        ---T    AAATTCTAAAAGGCAGTATAACTTAGAACGCCGTGTACGTACTTCGTAATTTATATTTGCTTTTGTTTTTGATTAATGTGTCAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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