SE2850037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9042
  • Sorghum bicolor
  • SE2850037
  • PIF/harbinger
  • To9
  • chromosome_2:70441782-70442084
  • TTA
  • AGAGCATCCCCAACCGTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                    ACATAA     TTGGCAAATGAGGGAGTTTGCCAAGTCTAAAAAAAATATGGCAAAGGTGAAAAGAGGCAATCTCCAATGGTTTGGCATTAATCACTTCGCGCCAATTTTCCAATGCCAAGTGTGAACAAGT
  AGAGCATCCCCAACCGTTTT      TTGGT                                                                                                                         
  ||||||||||||||||||||      |||||                                                                                                                         T
  TCTCGTAGGGGTTGGCAAAA      CGTTT                                                                                                                         
AT                    ------     ATTCGAAACGTAAGTACATAAACGTTTTTTCAGAATTTTTGTGAATAGGTTGCCAAACCGTAAATCTGAAACGTTAAAACAATTGAACCGTTTTTCTCTCCTTCCTAACCGTATATACGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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