SE2820039

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9044
  • Sorghum bicolor
  • SE2820039
  • Mutator
  • M2
  • chromosome_4:36004970-36005521
  • AAACATATA
  • GGAAAAAGTCCAAATTACTCACCTCAGGTTTGGCATATGTCCGGATTACCTCGTAAACTTACATTTGGTTCAATTTACTCCCTCCAACTATTTTAGTTGGTCT

Secondary structure and sequence

TSD    TIR
5'



3'
AAACATATA            A       A    -         A           T     G      TAC          A        CTC         TA        AGTTT  -      A     TTTGTTAATTCTATTTTTCCACGTATTAGTTGAGTCTTATTATCAACTTTTGCGATATTATAGAGAGCATCATAAGTTATGTTAGAAAAAATATATTTTAAATTTTTACCAAAATTTTGATAGCTTAGGAAATTTAACAATAAAT
         GGAAAAAGTCCA ATTACTC CCTC AGGTTTGGC TATGTCCGGAT ACCTC TAAACT   ATTTGGTTCA TTTACTCC   CAACTATTT  GTTGGTCT     AC CCTTTA TATGA                                                                                                                                                 
         |||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||| ||||||   |||||||||| ||||||||   |||||||||  ||||||||     || |||||| |||||                                                                                                                                                  
         CCTTTTTCAGGT TAATGAG GGAG TTCAAACCG ATACAGGTTTA TGGGG GTTTGA   TAAACCAAGT AAATGAGG   GTTGATAAA  CAACCAGG     TG GGAAAT TCTCT                                                                                                                                                 
ATATACAAA            A       -    A         G           T     A      TTA          C        TAA         TA        ATGAT  T      -     AAAAAGAAGCAAACAAAGAGATACATGTTTAATATAAAACAAAAGTTTAAAACACTCCACTATCTTCTATAACATAAAACACAATCTTTTTACGTGATACTAAAAAGTAGTAATACAAAATATACTATAATATATAGATGACAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End