SE2850040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9045
  • Sorghum bicolor
  • SE2850040
  • PIF/harbinger
  • To3
  • chromosome_4:610443-610684
  • TAA
  • AGGCTTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             ATCAAAAA       -----  -   TT     TTTTTGTTTTTATTTGACAAACATTGTCTAATCATAGAATAACTAGGCTTAAAAGATTCGTCTCACGATTTACAAGGAAAC
  AGGCTTTGTTTAG        AGTTTTT     AG ATT  GACAA                                                                                 
  |||||||||||||        |||||||     || |||  |||||                                                                                  
  TCCGGAATAAATC        AAGTGGG     TG TTT  TTGAA                                                                                 
AA             --------       GTTTT  G   --     AAGTTTTAAAGAGCAGTGTAGTTTAGAACACCGTGTACGTACCTCGTAATTTATATCTACTTTTATTTTTGATTAACGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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