SE2850044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9049
  • Sorghum bicolor
  • SE2850044
  • PIF/harbinger
  • To1
  • chromosome_2:7712212-7712460
  • TAA
  • AGGCCTTGTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTCAAACCAAAAACCAAAAA    TCAAGATTCCCCATCACATCGAATCTTACGGCACATGCATGAAGCATTAAATATATACGAAAACAAAAACTAATTGCACAGTTTAGCTGTAAA
  AGGCCTTGTTTAG                    GTTT                                                                                             
  |||||||||||||                    ||||                                                                                             T
  TCCGGAACAAATC                    CTTT                                                                                             
AA             ----------------TACA    TTTAAAACTTAAAGCGATGACATCGTGAAAGCAAACAAACACTGTTTATAATAGATTAGTACCTGATTGATCTTAGTTTTCTAAGCAGAACGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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