SE2850045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9050
  • Sorghum bicolor
  • SE2850045
  • PIF/harbinger
  • To11
  • chromosome_9:48583590-48583804
  • TAA
  • AGGGGGTGTTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               GGGG        G    -      -- CT   GCATTTTCGTCTTATTTGAAAATTAGGCTTAAAAGATTCGTCTCGCAAATTACTCTCTAGC
  AGGGGGTGTTTGGTT    TTGGTAAA TTTA ACAGTT  A  GTA                                                             
  |||||||||||||||    |||||||| |||| ||||||  |  |||                                                              
  TCCCCCACAAACCAA    GGCCATTT AAAT GCGGGT  T  GTA                                                             
AA               AGGA        G    G      AG --   GCTTACAAACCTGTGTACGTATCTCGTGATTTATATCAGATAAATGCTTTGATTTTTGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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