SE2840051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9056
  • Sorghum bicolor
  • SE2840051
  • CACTA
  • Ca1
  • chromosome_8:46435603-46435790
  • TAA
  • ACACAACCAGAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    A        TTTCAATTTCTCCTAGTA T                     -  CATTCAAAATTTA    AA CTTTCCCTAGTAAATACCTCCTAGTGAGGATT
  ACAC ACCAGAAT                  G GTGGGGTTCTCCTAGTGTTTT AG             GTAT  A                                
  |||| ||||||||                  | ||||||||||||||||||||| ||             ||||  |                                 
  TGTG TGGTTTTA                  C CACCTCAAGAGGATCACAAAA TC             ATCA  T                                
AA    A        ------------------ -                     A  ------------A    -- TATTTTGTGATGGTGATCAGTTTTGTGATCCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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