SE2850053

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9058
  • Sorghum bicolor
  • SE2850053
  • PIF/harbinger
  • To13
  • chromosome_8:50043732-50043999
  • TTA
  • AGAGCAACTCCAAGAGCTTGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                C       TTCTTGTTG     G   TTTTAGAATTTGCAAGCAAAAAGTAGACTCCAACAGATGTGCTATCTAATTTTGTAAAATAGAAAGTTGACTATCCCTTGATTTTTGATACT
  AGAGCAACTCCAAGAG TTGGCTA         TGGAG CTA                                                                                            
  |||||||||||||||| |||||||         ||||| |||                                                                                             
  TCTCGTTGAGGTTCTC AACCGAT         TGATT GTT                                                                                            
AT                C       ----TTTAA     A   TAAAATAACAAATCAGTAAAACATTTTATCTTTTGAAGAATTTTTTTCTTCTTCAGGTGTTGTCGGAACGATAAAATGTTTTAGTCTATCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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