Plant MITE

SE2850059

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9064
Sorghum bicolor
SE2850059
PIF/harbinger
To15
chromosome_5:6366867-6367470
TTA
AGAGCATCTCCAATAGTTATGCAATTGGACTATGC

Secondary structure and sequence

TSD TIR

5'

3'

 TT                             CTA   ATTCTAGAAA     ---   - AA CTTTAAAATGGCTCTCCAACAGTTATGCATTTGACTTATGCATTTTTGGCAAACTTGGCATTTGATGGACCAAACTTGGCATTTTTGCATAGGCACAATGGCTTGGCAATTTTGATATCCCGAGTTTCCTGGACTCATTGTCGTGCGCGACCTGCCCACGCGCTGCGGTAGTTTCCCGCGAGGACTCCTCCTCCCCGCGCGAACTCTTCTTTCACCCGCGTTGCCGCCTCCTTTCTTCACGCCGCC
   AGAGCATCTCCAATAGTTATGCAATTGGA   TGC          TTTGC   TAA A  C                                                                                                                                                                                                                                                      
   |||||||||||||||||||||||||||||   |||          |||||   ||| |  |                                                                                                                                                                                                                                                      T
   TCTCGTAGAGGTTATCAATACGTTAACCT   ACG          GTAAA   CCT A  A                                                                                                                                                                                                                                                      
GAT                             TAA   ----------     CAA   T -- ACAGTTCAGGAATTTGCAAAACGGTTTCCTTTTTATTCAAGTAGAGGTTCACAAACCGTAAAAACTGATCTGTAAAGGATTTTATCACCTGGGTTGATAAAAACAGGCCCTAGAAAAAAACAAACCGCGCAAAGCGCGTTCTAAAAAGGAGACGCGCTACCTAGAGAGGATCGGAGCGCAGCGCACTTCCTTCCTCTCCTGCGCCGCTACCTAGCATAGAGGATCAACGCGTGTCCCTTTCTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850059

TTAGAGCATCTCCAATAGTTATGCAATTGGACTATGCATTCTAGAAATTTGCTAAAAACCTTTAAAATGGCTCTCCAACAGTTATGCATTTGACTTATGCATTTTTGGCAAACTTGGCATTTGATGGACCAAACTTGGCATTTTTGCATAGGCACAATGGCTTGGCAATTTTGATATCCCGAGTTTCCTGGACTCATTGTCGTGCGCGACCTGCCCACGCGCTGCGGTAGTTTCCCGCGAGGACTCCTCCTCCCCGCGCGAACTCTTCTTTCACCCGCGTTGCCGCCTCCTTTCTTCACGCCGCCTTTTTTCTTTCCCTGTGCGCAACTAGGAGATACGATCCATCGCCGCGTCCTCTCCTTCCTTCACGCGACGCGAGGCTAGGAGAGATCCATCGCGCAGAGGAAAAATCTTGCGCGAAACGCGCCAAACAAAAAAAGATCCCGGACAAAAATAGTTGGGTCCACTATTTTAGGAAATGTCTAGTCAAAAATGCCAAACACTTGGAGATGAACTTATTTTTCCTTTGGCAAAACGTTTAAGGACTTGACAAATTCCAACAAATGGCAAATTCCAATTGCATAACTATTGGAGATGCTCTTAG

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