SE2850060

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9065
  • Sorghum bicolor
  • SE2850060
  • PIF/harbinger
  • To3
  • super_2489:2435-2682
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             T  ACCCAAAAACCAAAAACTTTT      TCTTCGTCACATCGAATCTTGCGTTATATGTATGGAACATTAAATATAGACGAAAACAAAAACTAATTGCACAGTTTACCTGTAAATCG
  AGGCCTTGTTTAG TC                     TAAGAT                                                                                         
  ||||||||||||| ||                     ||||||                                                                                         C
  TCCGGAACAAATC AG                     GCTTTT                                                                                         
AT             T  ---------------------      CAAAAACCTAAAATTGTACCATCATAAAAGCAAAAATAAACTGTTTGTAATAGATTAGTACTTCATTGATCCGAATTTTCTAAGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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