SE2850064

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9069
  • Sorghum bicolor
  • SE2850064
  • PIF/harbinger
  • To2
  • chromosome_9:47636173-47636421
  • TTA
  • AGGCCTTGTTTACTTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            C    -AAATTT           ----A  AA      CATT     TT   TTT --------  -  ATATTGTCTAATTATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCC
  AGGCCTTGTTTA TTCT       TTTTGCAAAAT     GG  TAGTAG    TTCGT  TTA   G        AC AA                                                     
  |||||||||||| ||||       |||||||||||     ||  ||||||    |||||  |||   |        || ||                                                      
  TCCGGAACAAAT AAGG       AAAACGTTTTA     TC  TAAGAG    GTAGT  AGC   T        TG AT                                                     
AT            C    GATTTTT           AAAAG  --      ----     GT   --- TAGAAATC  C  ACGTACCTCATAATTTATATCTATTTTTATTTTTAATTAACGTATCAAACCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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