SE2850065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9070
  • Sorghum bicolor
  • SE2850065
  • PIF/harbinger
  • To1
  • chromosome_5:55520603-55520851
  • TAA
  • AGGGCTTGTTTAGATGCAAAAACTTTTTGGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G              ----       TTT       A  ACTGTAGCACTTTCGTTTTTATTTGACAAACATTGTCCAATCATGGAGTAACTAGGCTTAAAAGATTCGTCTGGCGATTTACAG
  AGG CTTGTTTAGATGCA    AAAACTT   GGATTTT GC                                                                                    
  ||| ||||||||||||||    |||||||   ||||||| ||                                                                                     
  TCC GAACAAATCTACGT    TTTTGGG   TTTGAAA TG                                                                                    
AA   G              GGGT       --T       -  TTCTAAGAGGTAGTGTAGTTTAGAACGCAGTGTACGTACCTCATAATTTATATCTATTTTTATTTTTGATTAATGTGTCAAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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