Plant MITE

SE2810071

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9076
Sorghum bicolor
SE2810071
Tc1/Mariner
St7
chromosome_9:5645317-5645577
TA
TACTCCCTGCATACCCATAAAGAAAGTCGTTTGGACAA

Secondary structure and sequence

TSD TIR

5'

3'

        G    CC                 -      ------      GG    ACATTGAGAATATAAATCATGAATAACTTTTAAGTTGTTGAATTTGAAAATGTGAAAACCATATAAATAGATTGGTCT
TACTCCCT CATA  CATAAAGAAAGTCGTTT GGACAA      GATTTG  TCAA                                                                              
|||||||| ||||  ||||||||||||||||| ||||||      ||||||  ||||                                                                               
ATGAGGGA GTAT  GTATTTCTTTCAGCAAA CCTGTT      CCAGAG  TTTC                                                                              
        G    -A                 T      GCTTTG      -G    AGATTGAAACTGAGTAACAAAAATATTTTTATAAATAGTTTTTCACCATATACATATGAAAATATTTTTATAAAAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810071

TACTCCCTGCATACCCATAAAGAAAGTCGTTTGGACAAGATTTGGGTCAAACATTGAGAATATAAATCATGAATAACTTTTAAGTTGTTGAATTTGAAAATGTGAAAACCATATAAATAGATTGGTCTTGAAAAATATTTTTATAAAAGTATACATATACCACTTTTTGATAAATATTTTTATAAAAACAATGAGTCAAAGTTAGACTTTGGAGACCGTTTCGTTGTCCTAAACGACTTTCTTTATGATATGGAGGGAGTA

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