Plant MITE

SE2810072

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9077
Sorghum bicolor
SE2810072
Tc1/Mariner
St9
chromosome_8:49249062-49249323
TA
TACTCCCTCCATTCCAAATTATAAGACATTCCAAGAATTTAGAGGGTCAAACCATCTCAAGTTTGACCAAAATTATAGAGAGA

Secondary structure and sequence

TSD TIR

5'

3'

                 A      G               -A          C                         -  -    ATTACAAAG      GACATCAAATAGATATACTATGAAAATATAATTAAT
TACTCCCTCCATTCCAA TTATAA ACATTCCAAGAATTT  GAGGGTCAAA CATCTCAAGTTTGACCAAAATTATA GA GAGA         ATTTAT                                    
||||||||||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||| || ||||         ||||||                                     
ATGAGGGAGGTAGGGTT AATATT TGTAAGGTTCTTAGA  CTCTCAGTTT GTAGAGTTCAAACTGGTTTTAATAT CT TTCT         ATTATT                                    
                 A      G               AC          C                         A  A    ---------      ATAAATAATATGGTTGATTCATAGTAATCTAAGAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810072

TACTCCCTCCATTCCAAATTATAAGACATTCCAAGAATTTAGAGGGTCAAACCATCTCAAGTTTGACCAAAATTATAGAGAGAATTACAAAGATTTATGACATCAAATAGATATACTATGAAAATATAATTAATGAAGAATCTAATGATACTTAGTTGGTATAATAAATATTATTATCTTATCATATAATTTTGGTCAAACTTGAGATGCTTTGACTCTCCAAGATTCTTGGAATGTGTTATAAATTGGGATGGAGGGAGTA

Copy Cancel