SE2850073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9078
  • Sorghum bicolor
  • SE2850073
  • PIF/harbinger
  • To1
  • chromosome_2:71240383-71240631
  • TTA
  • AGGCCTTGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT            CATACACCTAAAAACCCAAAAC    ---T   ATTCTCTGTCACATCGAATCTTGCGGCACATGCATAAAGTATTAAATATAGATAAAAAGAATAACTAATTGCACAGTTTATCTGTAAAT
  AGGCCTTGTTTA                      TTTA    AAG                                                                                         
  ||||||||||||                      ||||    |||                                                                                         C
  TCCGGAACAAAT                      TACG    TCA                                                                                         
AT            ---------------------C    TTTT   AAAACCTAAAACTGTGACATCGTAAAAGCAAAAATAAACTGTTTGTAACAGATTAGTACCTCATTGATCCGAATTTTCTAAGCAGAGCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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