SE2850077

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9082
  • Sorghum bicolor
  • SE2850077
  • PIF/harbinger
  • To18
  • chromosome_8:53304786-53305033
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               ACACCC       AA ATCTTTTCAAGATTTCTCGTCACATCGAATCTTGCGGCACATGCATGGAGCATTAAATATAGATAAAAAATAATTAATTGTATAATTTGTTT
  AGGCCTTGTTTAGTT      GAAATCT  A                                                                                            
  |||||||||||||||      |||||||  |                                                                                            G
  TCCGGAACAAATCAA      CCACTTT  T                                                                                            
AA               -GAGAC       -- CAAAAAAAATGTGGCATCGTGAAAGCAAATATAAATCATTAATAACCAGTTGGTACTTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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