SE2850078

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9083
  • Sorghum bicolor
  • SE2850078
  • PIF/harbinger
  • To19
  • chromosome_3:4138824-4139026
  • TAA
  • AGGGGGTGTTTGGGACTGATCTGCTCCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A   ----       -GTTTTT         TCCA     TTTAGCCAAACGGTTCCAGCTCCACGCACTGAGTTCGAGAAAAAAG
  AGGGGGTGTTTGGGACTG TCT    GCTCCAC       CAGCTCCAC    CGTTT                                              
  |||||||||||||||||| |||    |||||||       |||||||||    |||||                                               
  TCCCCCACAAACCCTGAC AGG    TGAGGTG       GTCGAGGTG    TTTTT                                              
AA                  G   TGTT       GTACCTC         ----     TGACCTCAAACACCTCATGGGGAAATCCACGAGAGTGTTGAGGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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