SE2850080

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9085
  • Sorghum bicolor
  • SE2850080
  • PIF/harbinger
  • To16
  • super_31:298167-298454
  • TCA
  • AGAGCACTCACAATGCAGACTCTATCATAGAGTCTAAAGTTATTTATCACCTCGAACAATGTGGACTTAGAGTCTAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC  A                                            C                             GG   CTCACAATGCAAGACTCTATCACAGAGTCCAAGACAATTAATTACACATTATTTATGGTAT
  AG GCACTCACAATGCAGACTCTATCATAGAGTCTAAAGTTATTTAT ACCTCGAACAATGTGGACTTAGAGTCTAA  GCA                                                             
  || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||                                                              
  TC CGTGAGTGTTACGTCTGAGATAGTATCTCAGATTTCAATAAATA TGGAGCTTGTTATACCTGAATCTCAGATT  TAT                                                             
AA  C                                            A                             --   TCTGAATCTCAGAATAAAAAAAATGGAGAAAGAAGTTATTTATACGACGGTGTAGTCGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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