SE2850083

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9088
  • Sorghum bicolor
  • SE2850083
  • PIF/harbinger
  • To13
  • chromosome_5:1381229-1381510
  • TAA
  • AGAGCAACTCCAACAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      A      C         A  -  T   ATGAAGGCTTTTTAGAACTTGTATAGTAGAAAAATAGGCTCCAGCAGATGTGCTATTTGGTTTTGTAAAATAGAAAGTTTGCTATTCCTTGATTTTCGTTGGCCATA
  AGAGCA CTCCAA AGCTTTGTT TT CT ATT                                                                                                           
  |||||| |||||| ||||||||| || || |||                                                                                                           T
  TCTCGT GAGGTT TCGAACCGA TT TA ATC                                                                                                           
AA      A      C         -  T  -   ATCGATTTAAGATTACTAATCGGTAAAACATTTTATCTGTTGAAGAATTTTTTCTTCTCCAGGTGTTGTCAGAACGATAGTCTATCGATCACAGTCACCAACCGATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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