SE2830085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9090
  • Sorghum bicolor
  • SE2830085
  • hAT
  • Hat7
  • chromosome_1:120022-120673
  • GTTGTTTT
  • TCAATGTTTTCAGGTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGTTT                 -A       AA  -----   TTGACCTGGGACCGACCAGACGATTAATCGTCGACCAGATCGATTAATCGACCCTGGTCGACCCTAGTCGTCCATCTGGTTGTCCATGTATATCAGGACATATACCTATATATATACCTCTCTATATATACCATATTATACACAATAAAGGAAGCATCAAGACTGCATTAGTGTTTAGCTGGTGACTTATTTGTGGAAGTTGTTTTCCTCTCTTTTCTGCACTGTCCAGAGGTCCATATTCATGTCCCAAACTCCATTTCTTTGCTGACTTGCTGCTGGCAGCCT
       TCAATGTTTTCAGGTCG  CTGGTCG  CC     TGG                                                                                                                                                                                                                                                                                             
       |||||||||||||||||  |||||||  ||     |||                                                                                                                                                                                                                                                                                              
       GGTTACAAAAGTCCAGC  GCTAATT  AG     ATC                                                                                                                                                                                                                                                                                             
TTTTGTT                 AG       --  CGCTA   AGTAGGACCAACCAGGGTTCACAAGCTAATCCTCCAGGCCGAGCTGGTCTTTCGACCAGCAGGCTAATCAGCTGCTGATTAGGCTGGTCTTGTACCTGCTGGTCAAACCAATGAGACAAAAACCCGGATAAATTGGTCCTTTACCTGAAACCAATACATTATACGACCGACACACCGACGATACAGACGATTTACAATCAATAAACGATAACGTCGTCACGACGACAATTCCACACAGTTCTAGTTCTGACGTAATCACAACGACGAACGATTAATACCATAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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